HsaEX6080549 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41542062-41545748:-
Coord C1 exon
chr8:41545674-41545748
Coord A exon
chr8:41543670-41543801
Coord C2 exon
chr8:41542062-41542208
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTCTTTGCTTGCAGAGT
3' ss Score
9.01
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
GTTCTCTCAGTGGGACAGAGCAGGCAGAGATGAAGATGGCTGTTATCTCAGAGCACCTCGGTCTCAGCTGGGCAG
Seq A exon
AGTTGGCCCGGGAGCTGCAGTTCAGTGTGGAAGACATCAACAGGATCCGAGTGGAAAATCCCAACTCCCTGTTGGAGCAGAGTGTGGCCTTGCTGAACCTCTGGGTCATCCGTGAAGGCCAAAACGCAAACA
Seq C2 exon
TGGAGAATCTGTACACAGCCCTGCAGAGCATTGACCGTGGCGAGATCGTGAACATGCTGGAGGGTTCCGGCCGACAGAGCCGCAACTTGAAGCCAGACAGGCGGCACACCGACCGCGACTACTCGCTGTCACCCTCCCAGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'39-43,'39-42,40-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=0.000 C2=0.609
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(19.0=61.5)
A:
PF0053117=Death=FE(52.4=100)
C2:
PF0053117=Death=PD(27.4=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCAGTGGGACAGAGCAG
R:
TTCATCTGGGAGGGTGACAGC
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)