MmuEX6034884 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23120900-23123978:+
Coord C1 exon
chr8:23120900-23120974
Coord A exon
chr8:23122769-23122900
Coord C2 exon
chr8:23123832-23123978
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTCTTTGCCTACAGAGC
3' ss Score
8.61
5' ss Seq
AGAGTCAGT
5' ss Score
-0.66
Exon sequences
Seq C1 exon
GTTTTACCAGTGACACAGACCGTGTCGAAATGAGGATGGCTGTCATCAGAGAACACCTCGGCCTAAGCTGGGCAG
Seq A exon
AGCTGGCCCGGGAGCTGCAGTTCAGCGTGGAAGACATCAACCGGATCCGTGTAGAAAACCCTAACTCCTTGTTGGACCAGAGTACAGCCTTGCTGACCCTCTGGGTGGACCGTGAAGGCGAAAATGCAAAGA
Seq C2 exon
TGGAGAATTTGTACACAGCCCTGCGGAACATCGACAGGAGTGAGATTGTTAACATGTTGGAGGGCTCCGGCAGGCAGAGCAGAAACCTCAAACCAGAGCGGAGACATGGGGACCGGGAGTACTCATTGTCACCCTCCCAGGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'46-69,'46-62,47-69=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.510
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(19.0=61.5)
A:
PF0053117=Death=FE(52.4=100)
C2:
PF0053117=Death=PD(27.4=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACCAGTGACACAGACCGT
R:
CCTGGGAGGGTGACAATGAGT
Band lengths:
214-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types