HsaEX6080549 @ hg38
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1 [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr8:41668267-41688589:-
Coord C1 exon
chr8:41688511-41688589
Coord A exon
chr8:41686152-41686283
Coord C2 exon
chr8:41668267-41668564
Length
132 bp
Sequences
Splice sites
3' ss Seq
TGTTGGTTCTTTGCTTGCAGAGT
3' ss Score
9.01
5' ss Seq
ACAGTCAGT
5' ss Score
0.29
Exon sequences
Seq C1 exon
GGAAGTGGAGCCGAAGATAGGAGAAGGACCCCGACGCCCCTGGCCCTGCGATACAGCATTCTCAGTGAGTCCACACCAG
Seq A exon
AGTTGGCCCGGGAGCTGCAGTTCAGTGTGGAAGACATCAACAGGATCCGAGTGGAAAATCCCAACTCCCTGTTGGAGCAGAGTGTGGCCTTGCTGAACCTCTGGGTCATCCGTGAAGGCCAAAACGCAAACA
Seq C2 exon
ACTGCAGGACTGGGATGCAGACGGCTCGATTGTCTCATACCTGCAAGATGCTGCACAAGGTTCCTGGCAAGAGGAGGTCACGCAAGGTCCACACTCATTCCAGGGAACAAGTACCATGACTGAAGGGCTAGAGCCCGGTGGATCTCAGGAGTACGAGAAGGTCCTGGTGTCTGTAAGTGAGCACACGTGGACAGAACAGCCCGAGGCTGAGAGCTCCCAGGCCGACAGGGACCGGAGGCAGCAAGGCCAAGAAGAGCAGGTGCAGGAGGCCAAGAACACCTTCACCCAAGTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534_MULTIEX2-2/7=C1-C2
Average complexity
C3
Mappability confidence:
88%=100=88%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.377 A=0.000 C2=0.988
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=FE(52.4=100)
C2:
NO
Main Skipping Isoform:
ENST00000265709fB9295
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATAGGAGAAGGACCCCGACG
R:
GTCCACGTGTGCTCACTTACA
Band lengths:
256-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains