DreALTA0000119-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68178535-68182687:-
Coord C1 exon
chr5:68182556-68182687
Coord A exon
NA
Coord C2 exon
chr5:68178535-68178603
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTGTCTCTCACCACTCTAGTGG
3' ss Score
8.27
Exon sequences
Seq C1 exon
AGTTGGGACGGGAACTGCAGTTTAATGTAGATGAAATAAATAAGATCCGTGTGGAGAATCCCAACTCCCTTTTAGAGCAGAGCTCAACGCTGCTCAACCTGTGGGCCGCCCGAGAGGGGAAGAGAGCCAAAA
Seq A exon
NA
Seq C2 exon
TGGACAGCCTGTACGTGGCCCTCAAGAGCATCGACCGAGTGGACATTGTGAACATGATGGAGGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-42-47,42-46-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF0053117=Death=FE(53.1=100)
A:
NA
C2:
PF0053117=Death=PD(27.2=39.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGGGAACTGCAGTTTAA
R:
CACTCGGTCGATGCTCTTGAG
Band lengths:
169-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]