GgaALTA1036465-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2619140-2619608:-
Coord C1 exon
chr22:2619477-2619608
Coord A exon
NA
Coord C2 exon
chr22:2619140-2619286
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GACACCGGCTTCCCCTGCAGTTG
3' ss Score
8.78
Exon sequences
Seq C1 exon
AGCTGGCACGTGAGCTGCAGTTTGGGGTGGATGACATCAACAGGATTCGTGTGGAGAACCCTAACTCCTTGCTGGAGCAGAGCATAGCCTTGCTTAACCTCTGGGTCAGCCGCGAGGGCAAGGGTGTCAAAA
Seq A exon
NA
Seq C2 exon
TTGAGAACCTGTACACAGCGCTGAGGAACATTGACCGCAGCGAGATCATCAGCACGTTGGAGGGCTCCGGCCGGCAGAGCCGCAGCATGAAGGGCAGCTGGCGTTACATGGACAGGGACTATTCACTCTCGCCCTCCCAGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-52-64,52-63-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.040
Domain overlap (PFAM):
C1:
PF0053117=Death=FE(52.4=100)
A:
NA
C2:
PF0053117=Death=PD(27.4=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGCTTAACCTCTGGGTC
R:
GGGCGAGAGTGAATAGTCCCT
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]