DreALTA0000252-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30579639-30581631:+
Coord C1 exon
chr8:30579639-30579778
Coord A exon
NA
Coord C2 exon
chr8:30581497-30581631
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GTGTTCTTATGATTTCACAGACA
3' ss Score
9.17
Exon sequences
Seq C1 exon
ACGCGAACACTCCAAAGTGCCTCTGATTGTGAGACAGTGTGTGGAGGAGATCGAGCGCAGAGGGATGGAGGAAGTGGGCATCTATCGGGTCTCTGGTGTGGCCACAGACATCCAGGCCCTGAAAGCTGCATTTGATGCCA
Seq A exon
NA
Seq C2 exon
ACAACAAAGATGTTTCAGTTATTATGAGTGAGATGGACGTGAATGCCATTGCTGGAACACTGAAGCTTTATTTCAGAGAGCTTCCCGAGCCCCTCTTCACTGATGAACTCTACATTAACTTCACTGAAGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-24-23,24-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.0=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.2=100)

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTATCGGGTCTCTGGT
R:
AGCAATGGCATTCACGTCCAT
Band lengths:
117-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]