HsaALTA1051811-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000186716 | BCR
Description
BCR, RhoGEF and GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr22:23311697-23313021:+
Coord C1 exon
chr22:23311697-23311918
Coord A exon
NA
Coord C2 exon
chr22:23312887-23313021
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
CATTTCCGTGCTCTTTCCAGATA
3' ss Score
10.19
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAGGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTCGACGTCAGTGAGTGTTGGCCTGCGCAGGACGGGATGGAGGTGTGGGCAATGGTGTCCGCGATGAGATCTCAGAGTGCTCCATGGCCCAG
Seq A exon
NA
Seq C2 exon
ATAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCAGGCACGCTGAAGCTGTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTTCGCAGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186716-55-67,55-64-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCAAGGTGCCCTACATC
R:
CCATCTCGCTCATCATCACCG
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains