HsaALTA1051811-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000186716 | BCR
Description
BCR, RhoGEF and GTPase activating protein [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr22:23311697-23313021:+
Coord C1 exon
chr22:23311697-23311918
Coord A exon
chr22:23312717-23312886
Coord C2 exon
chr22:23312887-23313021
Length
170 bp
Sequences
Splice sites
5' ss Seq
CAGGCATGT
5' ss Score
2.05
3' ss Seq
CACCCCTATCAACTCTGCAGACA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GAGAGAGAGGTCCAAGGTGCCCTACATCGTGCGCCAGTGCGTGGAGGAGATCGAGCGCCGAGGCATGGAGGAGGTGGGCATCTACCGCGTGTCCGGTGTGGCCACGGACATCCAGGCACTGAAGGCAGCCTTCGACGTCAGTGAGTGTTGGCCTGCGCAGGACGGGATGGAGGTGTGGGCAATGGTGTCCGCGATGAGATCTCAGAGTGCTCCATGGCCCAG
Seq A exon
ACACAGAACCATGCACAGCTCTTGGGAGGAGTCAGATGAGCTGCTCAAAGCCCAGGAGGGACCCGCACAGTGGTCAGCATGGCAGGGACAGTGCTTTAGCCAAGGCAGGGATGGTGGGAGACTCACTCGGGATCCTCAAGGAGGCCGCTGCATTTCCGTGCTCTTTCCAG
Seq C2 exon
ATAACAAGGACGTGTCGGTGATGATGAGCGAGATGGACGTGAACGCCATCGCAGGCACGCTGAAGCTGTACTTCCGTGAGCTGCCCGAGCCCCTCTTCACTGACGAGTTCTACCCCAACTTCGCAGAGGGCATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186716-55-67,55-64-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PU(26.1=83.3)
A:
NA
C2:
PF0062022=RhoGAP=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCAAGGTGCCCTACATC
R:
CCATCTCGCTCATCATCACCG
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains