DreALTA0000717-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103157 | CABZ01021450.4
Description
NA
Coordinates
chr4:71423113-71423930:-
Coord C1 exon
chr4:71423801-71423930
Coord A exon
chr4:71423241-71423244
Coord C2 exon
chr4:71423113-71423240
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGAT
5' ss Score
3.82
3' ss Seq
TTGATTATTCTCTTAAACAGACA
3' ss Score
7.25
Exon sequences
Seq C1 exon
AGAAAAACTCCTGCGGAAGCGACTGATCTCCACACTGTTATAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGATGTGAAGACTGAAGAAACATTCACAGTCAAACATGAAGATCCAGAGGAACAAACAG
Seq A exon
ACAG
Seq C2 exon
AAAAACTCCTGCTGAAGCGACTGATCTCCACACTGTTATAAAGATGGTGTTTATTAAAGAGGAGAGTGAAGATGTGAAGATTGAAGAAACATTCACTGTCAAACATGAAGATCTGCAGGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103157-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.467
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGAGTGAAGATGTGAAGACTGA
R:
GTGGAGATCAGTCGCTTCAGC
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]