DreEX6003174 @ danRer10
Exon Skipping
Gene
ENSDARG00000103157 | CABZ01021450.4
Description
NA
Coordinates
chr4:71340866-71423930:-
Coord C1 exon
chr4:71423801-71423930
Coord A exon
chr4:71423113-71423244
Coord C2 exon
chr4:71340866-71341905
Length
132 bp
Sequences
Splice sites
3' ss Seq
TTGATTATTCTCTTAAACAGACA
3' ss Score
7.25
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
Exon sequences
Seq C1 exon
AGAAAAACTCCTGCGGAAGCGACTGATCTCCACACTGTTATAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGATGTGAAGACTGAAGAAACATTCACAGTCAAACATGAAGATCCAGAGGAACAAACAG
Seq A exon
ACAGAAAAACTCCTGCTGAAGCGACTGATCTCCACACTGTTATAAAGATGGTGTTTATTAAAGAGGAGAGTGAAGATGTGAAGATTGAAGAAACATTCACTGTCAAACATGAAGATCTGCAGGAACAAACAG
Seq C2 exon
ACTTGTTGGTGCCGAAACAAGAGCAAGAACTTAAGGAAATAGAAGAGAAATGCCAGTCATTAAAAACGGAGGAAAAATACACCCCAAACCAAGAAACTTCATCACTGGACAATTCTCAGAAAACCAAATCTAAACGTTTTCATTGTCATCACTGTGGGAAGGCGTACAGTAAAAAAGCACACTTTACCTTACACATGAGAGTTCACACCGGAGAGAAACCTTTTACCTGCCAACAGTGTGGAAAAGCTTTCATACAGAAGCCAGCTCTCGATGTCCACATGAGAGTTCACACCGGAGAGAAACCCTTCACATGCCAACACTGTGGAAAAGGATTTACTCAAAAAAACGATGTTAACAATCATACAAGAATTCACACCGGAGAGAAACCTTTCACATGCCAACAATGTGGGAAGAGTTTCCGTATAAAACAGAAATTATATTGCCACATGAGAGTTCACACCGGAGAGAAACCGTACACCTGCCATCAGTGCGGGAAGAGTTTCGCTCAATATCCAACGCTTAGTAACCACATGAAAGTTCACACCGGAGAGAAGTTGTTCACTTGTGAACAGTGTGGAAAGAGTTTTGCGTATAAACATAAGCTTAAAATCCACATGAGAGTTCACACCGGAGAGAGGCCTTACAAATGCTCACTGTGTGACAAGAGTTTCATTCAGAAACTAACTCTTGACATTCACAAGAGAGTTCACACTGGAGAGAAACCGTTCGCTTGCCCACAGTGTGGAAACACCTTCACTCAAAAAGGAAGTCTCAATGTCCACATTAGAAGTATTCACGGGTCCGCTCGGAAACAAAAGCCTAAAGTCCAACGCAAGACCTAAGTGGTTTCGGCTTATGCCGGGGGTGTCCAAACTCCTGTGTCCTGCATAGCTTAGATCCAACTTCCTTCAACACACCTCCCTTGAAGTGTCTAGGGCTGCGTCCGAAACCGCTTACTACTCAGTAGATACTGCATTTGAATTGAAATGTACTACTCGGCCGTTAGAAAAGTACATGCTATACAATATGAATGTAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103157-'1-7,'1-1,2-7=AN
Average complexity
A_C3
Mappability confidence:
89%=100=71%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.467 C2=0.196
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF132401=zinc_ribbon_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF117813=RRN7=WD(100=7.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAGCGACTGATCTCCACA
R:
CTGTGAACACTTCTACAATCCTGA
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]