DreALTA0001550-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000103362 | FBXL19
Description
F-box and leucine-rich repeat protein 19 [Source:HGNC Symbol;Acc:HGNC:25300]
Coordinates
chr19:48354269-48354537:-
Coord C1 exon
chr19:48354505-48354537
Coord A exon
chr19:48354390-48354392
Coord C2 exon
chr19:48354269-48354389
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCTCTCTCTCTCTCTCAGCAG
3' ss Score
9.92
Exon sequences
Seq C1 exon
ATTAAAGGTGCCCGTGAGAAACACCTGAAGAAG
Seq A exon
CAG
Seq C2 exon
AAAGTGAAACCCAACTCCTCAGACTCCTCTGAGGCAAATGGGCCCAACTCCTCATCGGGCGGCGGGCATGGTTCGGGCACTGCAGCGGCATCGGCCTTGCTATCCGCCAGCCAGGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103362-4-5,4-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0064628=F-box=PU(71.1=8.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTGAGAAACACCTGAAGA
R:
CTGCAGTGCCCGAACCATG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]