DreALTA0006357-3/3 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000102591 | btr30
Description
bloodthirsty-related gene family, member 30 [Source:ZFIN;Acc:ZDB-GENE-040426-1407]
Coordinates
chr19:48322065-48480230:+
Coord C1 exon
chr19:48322065-48322085
Coord A exon
chr19:48454378-48454480
Coord C2 exon
chr19:48454481-48480230
Length
103 bp
Sequences
Splice sites
5' ss Seq
CACACACCA
5' ss Score
-14.37
3' ss Seq
GGATCTACGAGTGAACAGAGACA
3' ss Score
-21.05
Exon sequences
Seq C1 exon
CACACACACACACACGCACAC
Seq A exon
ACACTTCCAGAACCGTCAGCTGGAGCTCAGAGTCCCTGTTCATCTCATCTGTTCTCAAACACCTGTTGAATAAATCTCTCACACACTCACACACACACAGCAG
Seq C2 exon
AACCCCCCCGTGATGCTCAGCTGGACACCCACAGAACTCACACTGATCCTCCAACACAGCTCCGCCACAGTCCAGTGTGTGTGCGTTCACTCTCAACCTGAAACTGGCCTCCTGCCCTGACGCCGCAGAGGGCCGAGTGTGTGTGTGTGCTGAGGCGTGACGATCCATATAAATGATTCATAACTCAATGTTGTGCTGTTGTTCCTCCAGTCTGTCCATCACACACACCTTCACTGTCACATGTCTGAATATCAATCAATCAGTCTCCATTACTCACACACACACACACACATACACACACACACACAAATACACACACACACACACACACACACACACATACACACATACACACACACACTGAGATGTAGACAGTACGCTGGTGTCTCTCCTGCAGCAGTGTCCTCCAGTGTCCTGTTAATGTAGAGACCCGCTATAGCAGACTACACTGAGTGACTGTGCTGTCTCTGCAGAATCACACACTTACACTCACACACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102591-0-5,0-4,0-3-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACACACACACACGCACA
R:
TGTGATGGACAGACTGGAGGA
Band lengths:
244-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]