DreEX0024857 @ danRer10
Exon Skipping
Gene
ENSDARG00000023472 | ctnnb2
Description
catenin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2575]
Coordinates
chr19:48329298-48332520:-
Coord C1 exon
chr19:48332182-48332520
Coord A exon
chr19:48329501-48329659
Coord C2 exon
chr19:48329298-48329417
Length
159 bp
Sequences
Splice sites
3' ss Seq
TGAACTCTTGCTCTCTGCAGGCC
3' ss Score
9.87
5' ss Seq
GTGGTGCGT
5' ss Score
6.46
Exon sequences
Seq C1 exon
GAGGGCATGGAGGGTCTGCTGGGGACGCTGGTGCAGCTGCTGGCGTCTGATGACATTAACGTGGTGACCTGCGCCGCCGGCATCCTCTCCAACCTCACCTGCAACAACTACAAGAACAAGATGATGGTGTGTCAGGTGGGTGGCATCGAGTCGCTGGTGCGGACCGTGCTCAGAGCGGGAGACCGAGAGGACATCACGGAGCCGGCGGTGTGCGCGCTGCGACACCTCACCTCCAGACACCAGGACGCAGAGATGGCCCAGAATGCAGTGCGGCTCCACTATGGCCTGCCAGTGGTGGTCAAGCTGCTCCACCCGCCCTCACACTGGCCGCTCATTAAG
Seq A exon
GCCACTGTGGGTCTGATCCGGAACCTGGCTCTGTGTCCGGCCAATCACGCGCCGCTCCGCGAGCAGGGCGCCATCCCTCGCCTGGTGCAGCTGCTGGTGCGGGCGCATCAGGACACACAGAGGCGCACCTCCATGGGCGGCACACAGCAGCAGTTCGTG
Seq C2 exon
GAGGGCGTGCGCATGGAGGAGATCGTAGAGGGCTGCACCGGTGCTCTTCATATCCTGGCCAGAGACGTTCACAACCGCATCGTCATCAGAGGACTCAACACCATCCCTCTGTTCGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000023472_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=29.2),PF0051418=Arm=WD(100=38.1)
A:
PF0051418=Arm=WD(100=60.4)
C2:
PF0051418=Arm=PU(43.9=45.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATGGTGTGTCAGGTGGG
R:
CAGCCCTCTACGATCTCCTCC
Band lengths:
255-414
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001502; ELM sequence: RRTSMGG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]