GgaEX1018111 @ galGal3
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
NA
Coordinates
chr2:43474709-43476412:+
Coord C1 exon
chr2:43474709-43475047
Coord A exon
chr2:43475317-43475475
Coord C2 exon
chr2:43476293-43476412
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTTCTGAACTGCAGGCT
3' ss Score
8.39
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAGGGAATGGAAGGCCTTCTAGGAACTCTTGTTCAGCTTTTAGGATCAGATGACATTAATGTTGTGACTTGCGCTGCCGGAATCCTTTCTAACCTTACTTGCAACAATTACAAGAACAAGATGATGGTCTGCCAGGTTGGTGGCATCGAGGCTCTTGTGCGCACAGTTCTTCGGGCTGGAGACAGGGAAGACATCACAGAACCTGCTATTTGTGCGCTCCGTCACCTCACCAGCAGACATCAGGAAGCTGAAATGGCTCAAAATGCAGTACGTCTCCATTACGGACTCCCAGTGGTGGTTAAACTGTTGCACCCACCTTCACACTGGCCTTTGATCAAG
Seq A exon
GCTACTGTTGGGTTGATTCGCAATCTCGCGCTCTGCCCTGCAAACCATGCCCCACTGCGTGAACAAGGTGCTATCCCACGGCTAGTTCAGCTGCTGGTTAGAGCACATCAAGATACCCAGCGACGTACTTCCATGGGTGGAACGCAACAGCAGTTTGTG
Seq C2 exon
GAGGGTGTGCGCATGGAGGAAATCGTTGAGGGCTGTACTGGAGCCCTGCATATTCTTGCACGTGATGTTCACAATCGAATTGTAATCAGGGGTCTAAATACCATTCCACTATTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'19-23,'19-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=29.2),PF0051418=Arm=WD(100=38.1)
A:
PF0051418=Arm=WD(100=60.4)
C2:
PF0051418=Arm=PU(43.9=45.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGCGCACAGTTCTTCG
R:
GCAAGAATATGCAGGGCTCCA
Band lengths:
246-405
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001502; ELM sequence: RRTSMGG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]