DreEX6039317 @ danRer10
Exon Skipping
Gene
ENSDARG00000014571 | ctnnb1
Description
catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
Coordinates
chr16:6287791-6290519:-
Coord C1 exon
chr16:6290181-6290519
Coord A exon
chr16:6289922-6290080
Coord C2 exon
chr16:6287791-6287910
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTGGACGTATTCTTTCTAGGCT
3' ss Score
6.49
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAGGGCATGGAGGGGCTCTTGGGCACCCTGGTGCAGTTGCTCGGGTCAGATGACATCAACGTGGTGACGTGTGCTGCTGGAATCCTGTCCAACCTGACCTGCAACAACTACAAAAACAAGATGATGGTGTGCCAAGTGGGTGGCATCGAGGCCCTCGTGCGCACCGTTCTTCGTGCCGGAGACAGAGAGGATATCACAGAGCCGGCTATCTGCGCTCTCCGTCACCTCACATCCAGACACCAGGATGCAGAGATGGCCCAGAATGCAGTGCGGCTGCACTATGGACTGCCTGTAGTAGTCAAACTGCTCCACCCTCCTTCACATTGGCCTCTCATTAAG
Seq A exon
GCTACAGTCGGGCTGATCCGCAACCTGGCACTGTGCCCCGCCAACCATGCCCCGCTCCGAGAGCAGGGTGCCATTCCCCGCCTGGTGCAGCTTCTAGTCCGGGCCCATCAGGACACTCAGAGACGCACCTCCATGGGTGGAACACAGCAGCAGTTTGTG
Seq C2 exon
GAGGGTGTGCGTATGGAGGAGATTGTGGAGGGCTGCACTGGAGCTCTGCACATTCTAGCCAGAGACATTCACAACAGAATCGTCATCAGAGGACTCAACACTATTCCACTCTTTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014571-'18-21,'18-19,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.225 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=29.2),PF0051418=Arm=WD(100=38.1)
A:
PF0051418=Arm=WD(100=60.4)
C2:
PF0051418=Arm=PU(43.9=45.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATATCACAGAGCCGGCT
R:
AGTGTTGAGTCCTCTGATGACGA
Band lengths:
255-414
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001502; ELM sequence: RRTSMGG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]