GgaEX1018111 @ galGal4
Exon Skipping
Gene
ENSGALG00000011905 | CTNNB1
Description
catenin beta-1 [Source:RefSeq peptide;Acc:NP_990412]
Coordinates
chr2:44042482-44044185:+
Coord C1 exon
chr2:44042482-44042820
Coord A exon
chr2:44043090-44043248
Coord C2 exon
chr2:44044066-44044185
Length
159 bp
Sequences
Splice sites
3' ss Seq
ACCTCCTTTCTGAACTGCAGGCT
3' ss Score
8.39
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GAGGGAATGGAAGGCCTTCTAGGAACTCTTGTTCAGCTTTTAGGATCAGATGACATTAATGTTGTGACTTGCGCTGCCGGAATCCTTTCTAACCTTACTTGCAACAATTACAAGAACAAGATGATGGTCTGCCAGGTTGGTGGCATCGAGGCTCTTGTGCGCACAGTTCTTCGGGCTGGAGACAGGGAAGACATCACAGAACCTGCTATTTGTGCGCTCCGTCACCTCACCAGCAGACATCAGGAAGCTGAAATGGCTCAAAATGCAGTACGTCTCCATTACGGACTCCCAGTGGTGGTTAAACTGTTGCACCCACCTTCACACTGGCCTTTGATCAAG
Seq A exon
GCTACTGTTGGGTTGATTCGCAATCTCGCGCTCTGCCCTGCAAACCATGCCCCACTGCGTGAACAAGGTGCTATCCCACGGCTAGTTCAGCTGCTGGTTAGAGCACATCAAGATACCCAGCGACGTACTTCCATGGGTGGAACGCAACAGCAGTTTGTG
Seq C2 exon
GAGGGTGTGCGCATGGAGGAAATCGTTGAGGGCTGTACTGGAGCCCTGCATATTCTTGCACGTGATGTTCACAATCGAATTGTAATCAGGGGTCTAAATACCATTCCACTATTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011905-'25-25,'25-24,27-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.208 C2=0.000
Domain overlap (PFAM):
C1:
PF0051418=Arm=WD(100=29.2),PF0051418=Arm=WD(100=38.1)
A:
PF0051418=Arm=WD(100=60.4)
C2:
PF0051418=Arm=PU(43.9=45.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTGCGCACAGTTCTTCG
R:
GCAAGAATATGCAGGGCTCCA
Band lengths:
246-405
Functional annotations
There are 1 annotated functions for this event
PMID: 16476742
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, protein kinase assay, western blot. ELM ID: ELMI001502; ELM sequence: RRTSMGG; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]