DreALTA0021682-1/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000018124 | psmd3
Description
proteasome (prosome, macropain) 26S subunit, non-ATPase, 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1444]
Coordinates
chr19:48392711-48454615:+
Coord C1 exon
chr19:48392711-48392847
Coord A exon
NA
Coord C2 exon
chr19:48454515-48454615
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTCAGCTGGACACCCACAGAAC
3' ss Score
0.63
Exon sequences
Seq C1 exon
GCTCAGAAAGTCTCAGATGATCTCCTTCAGAAGATCGGCTCTCAGAACCGCCGTGCGCTGGATCTGGTGGCCGCTAAGTGCTACTATTATCACTCACGTGTGTATGAGTTCCTGAACCAGCTGGACGTGGTGCGCAG
Seq A exon
NA
Seq C2 exon
AACTCACACTGATCCTCCAACACAGCTCCGCCACAGTCCAGTGTGTGTGCGTTCACTCTCAACCTGAAACTGGCCTCCTGCCCTGACGCCGCAGAGGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018124-6-21,6-20,6-19,6-18-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(35.1=56.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]