DreEX0008983 @ danRer10
Exon Skipping
Gene
ENSDARG00000099581 | TNXB (2 of 2)
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr19:48433561-48434736:+
Coord C1 exon
chr19:48433561-48433683
Coord A exon
chr19:48434168-48434321
Coord C2 exon
chr19:48434617-48434736
Length
154 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGATGCAGGTG
3' ss Score
9.95
5' ss Seq
CCCGTAAGA
5' ss Score
5.66
Exon sequences
Seq C1 exon
GTCCGGAGCCTCCGTCTGCTCTGCTGTTCAGTGATGTGACCGACAGCTCCTTCACCGTCACCTGGAAAAAACCCAAGAGCAAAGTGTCTGGATTCAAGATCACACACACACATGTGCAGGAAG
Seq A exon
GTGAGCCCATCTCTGTCAGTGTGGACTCAGAAACTCTGCGTCTGGATGTGTCCTCCAGGGCTCCGGGCTCCACATATGAGGTGCGGGTGGTGTCGGTGCTCGGGCAGGACNNNNNNNNNNGAGAGTGACCCCATCACAGACACCGTCACCACCC
Seq C2 exon
TGCCGGACGCTCCCACACACCTGCAGGCCATCAATGTGACGGACAGTGAAGCTCTGCTGATCTGGAGACCGGCTCTGGCCACTGTAGACCACTACAGGATCCTCTACAGTCCTGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099581_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.220
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0004116=fn3=PU(46.3=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCTGCTCTGCTGTTC
R:
CTGCCTCAGGACTGTAGAGGA
Band lengths:
234-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]