GgaEX1059698 @ galGal4
Exon Skipping
Gene
ENSGALG00000004526 | TNR
Description
tenascin-R precursor [Source:RefSeq peptide;Acc:NP_990607]
Coordinates
chr8:7025037-7026575:+
Coord C1 exon
chr8:7025037-7025300
Coord A exon
chr8:7026093-7026359
Coord C2 exon
chr8:7026456-7026575
Length
267 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCTATGGCTTTCAGGGG
3' ss Score
8.14
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
AGCTTGATAGCCCCCGGGACCTCCTGGTGACAGCTTCCACAGAGACATCCATCTCACTGTCCTGGACCAAAGCCATGGGTCCCATTGACCACTACCGTGTCACCTTCACCCCTGCCTCAGGGATGGCCTCTGAGGTGACAGTGTCCCGTAACGAGTCGCAGCTCACTCTCTCTGAGCTGGAGCCAGGGACAGAGTATACCATCTCCATCATCGCTGAGAGGGGACGTCAGCAGAGCCTGGAAGCCACCGTGGATGCTTTCACAG
Seq A exon
GGGTCCGGCCCATCACGCAGCTGCACTTCTCCCAGCTGACGTCCTCGAGTGTGAACATCACATGGAGTGACCCATCCCCACCTGCAGACCGCCTGGTCCTCACCTACAGCTCCCGGGATGAGGAGGCTGCACAGCAGCTGGCACTTGATGGCACCCGCAGGCATGCCAGCCTGACAGGTCTGCGGCCATCCACCGAGTACCTGGTGTCCCTGGTGGCTGTCCATGGTGCAGTCAGCTCTGAGCCTGTCACGGGCTCCATCACAACAG
Seq C2 exon
GGATGGATGCACCAAAGGACCTCAGAGTGGGCAACATCACGCAGGACTCCATGGTCATCTACTGGAGCCCTCCTGTTGCTCCCTTTGATCACTACAGAATATCCTACCGTGCTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004526-'13-12,'13-10,14-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=0.289 C2=0.171
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=88.9)
C2:
PF0004116=fn3=PU(48.1=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACAGCTTCCACAGAGA
R:
ATGGAGTCCTGCGTGATGTTG
Band lengths:
292-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]