DreEX0080366 @ danRer10
Exon Skipping
Gene
ENSDARG00000020771 | tnr
Description
tenascin R (restrictin, janusin) [Source:ZFIN;Acc:ZDB-GENE-030804-1]
Coordinates
chr2:35438821-35448343:+
Coord C1 exon
chr2:35438821-35439084
Coord A exon
chr2:35442052-35442318
Coord C2 exon
chr2:35448224-35448343
Length
267 bp
Sequences
Splice sites
3' ss Seq
TTGTTGTGGTTCAATTCCAGGGT
3' ss Score
7.71
5' ss Seq
CAGGTATTG
5' ss Score
8.35
Exon sequences
Seq C1 exon
GTCTGGACGTCCCATTAGATTTGACTGTTACAGCCTCCACCGACAACACCATCACCCTTTTATGGGGCACAGTGCAGGGGCCTATTGATCACTATAGGGTGACTTACACATCATCCAGTGGAGTCACAACTGAGCTCACTGTGCCTAAAGACGTCACCACCACCACACTGACAAGCCTAGAGCCGGGCACCAAATACACAATCACTGTGGCAGCGCAACGAGGCAGGCAGCAGAGCACGGCGGCCACTATCGATGCCTTCACAG
Seq A exon
GGTTCCGCCCAATCACACAGCTCTTCTTCTCTGAGGTCTCCTCTGATTCATTGACTGTGGCGTGGAGTTCACCGGCTCCACCTGCTGACGCATTCATCTTGAACTACAGCGCTCAGGACTCCAGCGAGGATTCTGAGATTGCGCTTGATGGGTCGAAAACCAGAATCACCCTCACTGGTCTAATGCCATCCAGGCGCTACACTGTTACATTGGTCACCATGCATGGCAATGTGACTTCAAAGCCAGTTGTAGGCTCAGTCAACACAG
Seq C2 exon
GAATGGATCCTCCTAGAGACATCACTGTGCTGTATGTCACTGAAGAATCTGTAACCATAACATGGATTCAACCCCTCGCTCTCTTTGATTACTACAGAATGTCTTACCAATCATCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020771-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.122 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=88.8)
A:
PF0004116=fn3=WD(100=88.9)
C2:
PF140541=DUF4249=FE(26.3=100),PF0004116=fn3=PU(54.4=90.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGACAACACCATCACCCTTT
R:
GCGAGGGGTTGAATCCATGTT
Band lengths:
304-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]