BtaEX6069895 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011706 | TNR
Description
tenascin R [Source:HGNC Symbol;Acc:HGNC:11953]
Coordinates
chr16:58050356-58053035:-
Coord C1 exon
chr16:58052772-58053035
Coord A exon
chr16:58051663-58051932
Coord C2 exon
chr16:58050356-58050475
Length
270 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCCTCTGTTTTCAGGCT
3' ss Score
10.36
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
AACTCGACAGTCCTCGAGACCTCATGGTGACAGCCTCCTCGGAAACCTCCATCTCCCTCATCTGGACCAAGGCCAGCGGCCCCATTGACCACTACCGAATTACCTTTACCCCGTCCTCTGGGATCGCCTCTGAAGTCACTGTGCCCAAGGACAGGACCTCGTATACACTGACAGATCTAGAGCCCGGGGCAGAGTACATCATTTCAATCACAGCTGAGAGGGGCCGGCAGCAGAGCCTGGAGTCCACTGTGGATGCCTTCACAG
Seq A exon
GCTTCCGCCCCATCTCCCATTTGCACTTTTCTCACGTGACCTCCTCCAGCGTGAACATCACCTGGAGTGACCCATCCCCTCCGGCAGACAGACTCATTCTCAACTACAGCCCACGGGATGAAGAGGAAGAAATGATGGAGGTCTCCCTGGATGCCACCAAGAGGCATGCTGTCCTGATGGGCCTGCAGCCAGCCACCGAGTACATTGTGAATCTGGTGGCAGTCCATGGCACAGTGAGCTCTGAGCCCATCGTGGGCTCCATCACCACAG
Seq C2 exon
GAATTGATCCTCCCAAAGACATCACAATTAGCAATGTGACCAAGGACTCAGTTATGGTCTCCTGGAGCCCTCCTGTTGCATCTTTTGATTACTACCGAGTATCCTATCGGCCAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011706-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=0.198 C2=0.073
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(47.5=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTCCCTCATCTGGACCA
R:
AAAGATGCAACAGGAGGGCTC
Band lengths:
301-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]