RnoEX0092529 @ rn6
Exon Skipping
Gene
ENSRNOG00000002468 | Tnr
Description
tenascin R [Source:RGD Symbol;Acc:3886]
Coordinates
chr13:77638444-77640883:+
Coord C1 exon
chr13:77638444-77638707
Coord A exon
chr13:77639371-77639640
Coord C2 exon
chr13:77640764-77640883
Length
270 bp
Sequences
Splice sites
3' ss Seq
CAATCTTCTCTACTTTGCAGGCT
3' ss Score
8.31
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AGCTTGACAGTCCCCGAGACCTCATGGTAACAGCCTCCTCAGAGACCTCTATCTCTCTCATCTGGACGAAGGCCAGTGGTCCTATTGATCACTATCGAATTACTTTTACTCCATCTTCTGGGATCTCCTCAGAAGTCACTGTGCCTAGGGATAGGACTTCATATACACTGACAGATCTAGAGCCTGGAGCAGAATACATCATCTCCATTACTGCTGAGAGGGGTCGGCAGCAGAGCCTGGAGTCTACTGTGGATGCCTTCACAG
Seq A exon
GCTTCCGCCCTATCTCCCACTTGCACTTTTCTCATGTGACCTCCTCCAGTGTCAACATCACCTGGAGTGACCCATCTCCCCCAGCAGACAGACTCATTCTGAACTACAGCCCCAGGGATGAAGAGGAGGAGATGATGGAGGTTCTCTTGGATGCCACCAAGAGGCACGCCGTCCTAATGGGTCTACAGCCAGCCACTGAATATATAGTGAATCTCGTAGCTGTCCATGGGACAGTAACCTCTGAACCCATAGTGGGTTCTATCACTACAG
Seq C2 exon
GAATTGATCCTCCCAAAAACATCACAATTAGCAACGTGACTAAGGACTCCCTGACAGTTTCCTGGAGCCCTCCTGTTGCGCCTTTTGATTACTACCGAGTATCCTATCGACCCACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002468-'18-23,'18-22,19-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.179 C2=0.075
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.9)
A:
PF0004116=fn3=WD(100=89.0)
C2:
PF0004116=fn3=PU(36.7=90.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTCATCTGGACGAAGGCC
R:
ATCAAAAGGCGCAACAGGAGG
Band lengths:
300-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]