HsaEX6046437 @ hg38
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:HGNC:11976]
Coordinates
chr6:32043437-32044129:-
Coord C1 exon
chr6:32044007-32044129
Coord A exon
chr6:32043749-32043892
Coord C2 exon
chr6:32043437-32043556
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCGATCCCCAATGTTTTCAGGGG
3' ss Score
6.15
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
TTCTGGAGAGCCCCCGTGACCTCCAATTCAGTGAAATCAGGGAGACCTCAGCCAAGGTCAACTGGATGCCCCCACCATCCCGGGCGGACAGCTTCAAAGTCTCCTACCAGCTGGCGGACGGAG
Seq A exon
GGGAGCCTCAGAGTGTGCAGGTGGATGGCCAGGCCCGGACCCAGAAACTCCAGGGGCTGATCCCAGGCGCTCGCTATGAGGTGACCGTGGTCTCGGTCCGAGGCTTTGAGGAGAGTGAGCCTCTCACAGGCTTCCTCACCACGG
Seq C2 exon
TTCCTGACGGTCCCACACAGTTGCGTGCACTGAACTTGACCGAGGGATTCGCCGTGCTGCACTGGAAGCCCCCCCAGAATCCTGTGGACACCTATGACGTCCAGGTCACAGCCCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-'61-89,'61-87,64-89=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.357 A=0.490 C2=0.463
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.8=92.9)
A:
PF0004116=fn3=PD(50.0=81.6)
C2:
PF0004116=fn3=PU(46.9=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGAGCCCCCGTG
R:
CCCAGGGGCTGTGACCTG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains