HsaEX6046437 @ hg19
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:11976]
Coordinates
chr6:32011214-32011906:-
Coord C1 exon
chr6:32011784-32011906
Coord A exon
chr6:32011526-32011669
Coord C2 exon
chr6:32011214-32011333
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCGATCCCCAATGTTTTCAGGGG
3' ss Score
6.15
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
TTCTGGAGAGCCCCCGTGACCTCCAATTCAGTGAAATCAGGGAGACCTCAGCCAAGGTCAACTGGATGCCCCCACCATCCCGGGCGGACAGCTTCAAAGTCTCCTACCAGCTGGCGGACGGAG
Seq A exon
GGGAGCCTCAGAGTGTGCAGGTGGATGGCCAGGCCCGGACCCAGAAACTCCAGGGGCTGATCCCAGGCGCTCGCTATGAGGTGACCGTGGTCTCGGTCCGAGGCTTTGAGGAGAGTGAGCCTCTCACAGGCTTCCTCACCACGG
Seq C2 exon
TTCCTGACGGTCCCACACAGTTGCGTGCACTGAACTTGACCGAGGGATTCGCCGTGCTGCACTGGAAGCCCCCCCAGAATCCTGTGGACACCTATGACGTCCAGGTCACAGCCCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-'43-57,'43-56,45-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.491 C2=0.442
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(48.8=92.9)
A:
PF0004116=fn3=PD(50.0=81.6)
C2:
PF0004116=fn3=PU(46.9=92.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGAGCCCCCGTG
R:
CCCAGGGGCTGTGACCTG
Band lengths:
242-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)