DreEX0042162 @ danRer10
Exon Skipping
Gene
ENSDARG00000104889 | kpnb1
Description
karyopherin (importin) beta 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2579]
Coordinates
chr19:48374963-48377956:+
Coord C1 exon
chr19:48374963-48375124
Coord A exon
chr19:48376434-48376788
Coord C2 exon
chr19:48377177-48377956
Length
355 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTCCTGTGTGCGCAGATC
3' ss Score
10.37
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
GGACCTGTGCACCACCTTCGGGAAGGATGTGATGAAGCTGGTGGAGGTGCGTCCTCAGATCAATGACCTGCTGACTGAAGGCCGGAGATCCAAAACCAGCAAAACCAAGACTCTGGCCACGTGGGCCGCCAAGGAGCTGCGCAAGCTGAAGAGCCAAGCCTG
Seq A exon
ATCTCCGGCTGTGGAGTTTCTTCTTCTTCTTCTACCAGGACAAATGGAAATGAAAGCCCTGCGGTTCTTCTGTCTTTTAGAGCTGTGGACAGAAGTGCTTGTGCGCTGATGAGTGTGTGTGCGAGTGTGAGAGCGAGTGTAAGAGCGAGAGATTGACACACACCTTCAGTCCAGCTCCAGCAGAGGAACAGCGGCACACACCTCCACCTTCTCCACCTGCCCGCGTTCTCCATCCTGACCCGATCCTCCCCCCGGCCCGATCAGCTGCAGGACTGACCGTCACACACTGATTAGCAGACGGCGGCCGCGGGAACCTGCTGCTGGAGCCATGATGGCGTGACTGGAGTGTGTGTGT
Seq C2 exon
GAAACTGAGTGCCAAACCCAGCGGTGCAGATGGACTTGAGCTTAATGTGTTACTCGTAGAAGATGCGAATTAATAATACACACGTCAGCGGCGGCGAGCCGAGCAGCATCCATGTGCTTTTGGTTGTAATTTTTTGTTTTGTTTTCCTCTTGCGGCACTTAATTGGAGTCATTCACCGAGCTTTTAAGAAGACGACGACGGACAGAATCAGACATTTGTATGAGGTTATATTTTTCCATTGATATGAAAATAAAGTTAAATTAAATCTTTCTGCTGTGTGTGTGTGTGTGTTGTGTCTTCAATAATGGCACATAAATGAGCAGCACACGTCCACAAGACCAGTTCAGGAAAATAATTTAATAATAAATACATTTAAATAGAACATTACAGCGCACCCACAGGGCACAACATGTGTTAAACACACAACATGTGTCGGTCAACATGTGTTAAACACAACATGTGTCGGCTACCAAAATAACAAATGTTCAAAACAATAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104889_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
ENSDART00000160301fB3498
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCAAGACTCTGGCCACG
R:
AACACACACACACACACAGCA
Band lengths:
354-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]