DreALTA0002242-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28116549-28116830:+
Coord C1 exon
chr6:28116549-28116636
Coord A exon
NA
Coord C2 exon
chr6:28116724-28116830
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GATACTGTTTTAAACAGCAGGGG
3' ss Score
2.41
Exon sequences
Seq C1 exon
GTTCTGAGTTTGAATGAAACAGACTACTTCTTTGACAGCCTCAGACAGATTACTGATTGGTCCAAAAGAGCAAAGAGAGTGAATCAAG
Seq A exon
NA
Seq C2 exon
GGGCTCCAGTGAATGTGTCCTACACTGTTTTCTTTATGAGGAAGCTATGGTTCAACATTATCCCTGGGAGAGATGTGGAGGCAGATCTCATCTTCCATTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-42-44,42-43-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.5=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.9=48.6),PF0037313=FERM_M=PU(12.4=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTACTTCTTTGACAGCCT
R:
GTAGGACACATTCACTGGAGCC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]