HsaALTA1045126-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127634596-127635226:+
Coord C1 exon
chr2:127634596-127634683
Coord A exon
chr2:127635120-127635185
Coord C2 exon
chr2:127635186-127635226
Length
66 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTGCTGGCCCTCGCCCAGGGG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGATTCCTTGAGGGAGGTGTCTGACTGGGTGAAGAAGAACAAGCCCCAGAAAGAAG
Seq A exon
GGGCCCCCGTGACGCTCCCCTACCAGGTGTACTTCATGCGGAAATTGTGGCTCAACATATCTCCAG
Seq C2 exon
GGAAGGATGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-62-67,62-66,62-65-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGCCAGAAGGAGGGAG
R:
TGGTGGTAATGGAGTATGGTGTCT
Band lengths:
127-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains