MmuALTA1012367-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:31961808-31962365:-
Coord C1 exon
chr18:31962278-31962365
Coord A exon
chr18:31961889-31961914
Coord C2 exon
chr18:31961808-31961888
Length
26 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTGCCGTCCCTCTTCTAGGGG
3' ss Score
11
Exon sequences
Seq C1 exon
GTCATCAGTCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
Seq A exon
GGGCCTCCGTGACACTTCCCTATCAG
Seq C2 exon
GTGTTCTTCATGCGGAAACTGTGGCTCAACGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-53-63,53-62-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGACAGCTTGAGGCAGGT
R:
ATGGTGTCTGCATTCACGTCC
Band lengths:
124-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types