HsaINT0108984 @ hg38
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:127634596-127635226:+
Coord C1 exon
chr2:127634596-127634683
Coord A exon
chr2:127634684-127635119
Coord C2 exon
chr2:127635120-127635226
Length
436 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTGCTGGCCCTCGCCCAGGGG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGATTCCTTGAGGGAGGTGTCTGACTGGGTGAAGAAGAACAAGCCCCAGAAAGAAG
Seq A exon
GTGAGGAGGCCTCTGTGGAGCTGGGGGAGGGCGTGGCTGGGTGGGTCGAGGGGGCACTGGCGGCCTCTGTGCGGCCCATGCCCATTCATCCATCCATTCGTTCCCGTGTGTCCCTGGGTTGTGGGAACAACCAGGCCCTGGGGCCCGGCGGTGAGGGCCAGCTCAGGCAGAAACAGGTGGCTGCACCTTGGAGTGATGAAGGATGCCCCAGGGCTGAGGGGCATGACCCTCATGGGCTGGGAGTGCGAGTCCAGGAATGTTCCTGGAGAAGGCAGCCTCTACACTAATATTGAAGGAAAATGTGGGGACTGGGGAGGAAGAAGCGTGGGGGCTTTCGAGGCAGGGAGGTGGCAGGCGCAGTGTGGGGGGTGGCAGGGGGTCAGGGCTGGTGTACCTGCTGGGACAGGCTTGGTGCCCACTGCTGGCCCTCGCCCAG
Seq C2 exon
GGGCCCCCGTGACGCTCCCCTACCAGGTGTACTTCATGCGGAAATTGTGGCTCAACATATCTCCAGGGAAGGATGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994:ENST00000409816:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGCCAGAAGGAGGGAG
R:
TGGTAATGGAGTATGGTGTCTGC
Band lengths:
190-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development