GgaINT0031431 @ galGal4
Intron Retention
Gene
ENSGALG00000001936 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr9:874829-876161:+
Coord C1 exon
chr9:874829-874916
Coord A exon
chr9:874917-876054
Coord C2 exon
chr9:876055-876161
Length
1138 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
ATAAGACATTGTTTCCTCAGGTG
3' ss Score
6.8
Exon sequences
Seq C1 exon
GTGATCAGTCAGAATGAAGCAGACTATTTCTTTGACTCACTGAGGCAGCTGACAGATTGGACCAAGAGGAACAAACCAGTGAAAGATG
Seq A exon
GTAAGGAGACAGCCAGCATGACAAGAAGCTGCATGAGATACTGTGTGGATCTGGGAAAACAGCAAACAGGACTGATTCCATCTTACCACGTGTGTGACAGGGTCTTATTTTACCATTTTTATTTGTACATATGTGGTTACTGCCTGCACCAGCAGTAAGACCCAGTGGCCTCATGCAACCAGCCACTGGCTGTTGGAAGTACCAGAATCTCTTTGCCTGGGGATCTCTGCAGGAATGTTAGAATTGTACAAAATATTTGATTTCTTCCACCCAAAACACGCATCTGGATACATACAACTTAGTTTGTCTATAATCCAAGGCTTATGCAATGCCAGACTGTGTATCACCCAACACATGTAAATAGGTTCTTTACACAGTGTTGCTCTGTCTCCTTGGGTCACTTGAAGATTGTTCTCGAGATTACCCCCTGGTGATACCAGATCACAAGTTGTATTGCTAAGGGAACACTTACCATAAACCAGTGTAACACTAACAGCAGCAATTCTTGACCTCACTATAACATATAACCAACGTCTTGAAATCTACAGCAAACTCCAATTAATATTAATTTCATATTAATTATGCTGACTTTTGCTTATTTCAGGACAGTGAGGTTCAGCTTCCAGAAGCAATAGGTATCTAAGACTTTCCAGCTTCCCTCTTCTTCCCACAGCTGTTGCAGCTGCTAGGATTTCTGAAAAATATAGCATAGAGATGTTAGTGCTCTAAATCACAATGAGTTTCTGTAAAACAGCCACTGGGGAATGGTGAGCTGATGAGCTAACTAATGAGTTCAAGTGAGCTGAACATCAGCAGACAGCAGCTTGTTACCAGCAGCAAGAAACAACAAACACTCATACTGCTGGGGCCTTCAGCCTCATTCTCCATTGCTGAAGAGCCCAATGCTGCACCAGTCACTATGTGATTGGTGTCCAAGAACTGACAACTAGTCACAGTTCCTTGGTCATCTAACACTGCCTTTTTTGTGGGTTGGTTTATTTTGTTGTGGCTGTCTTTATTTGTTTTTTTTTGTTATTATTAAAAATGGAATTGTATTTCTAAAGAAACTCTCAATCCAATTACAAAGGCAGAGCTCCACAGTGATACAGAGGACACTAATAAGACATTGTTTCCTCAG
Seq C2 exon
GTGCCACTATGTCTGTAGCTTATGAAGTGTACTTCATGAGAAAGCTGTGGTTGAATGTAACTCCTGGGAAGGACCTAAAAGCTGATTCTATTTTTCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001936:ENSGALT00000002994:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(11.6=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATCAGTCAGAATGAAGCAGACT
R:
TGGTGGTAATGAAAAATAGAATCAGC
Band lengths:
194-1332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]