RnoINT0097448 @ rn6
Intron Retention
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24749216-24749729:-
Coord C1 exon
chr18:24749642-24749729
Coord A exon
chr18:24749323-24749641
Coord C2 exon
chr18:24749216-24749322
Length
319 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCACTGCCGCCCTCTTCCAGGGG
3' ss Score
9.95
Exon sequences
Seq C1 exon
GTCATCAGCCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
Seq A exon
GTGAGGGGCTTCTCCCCGGAGGGGGCGGCTGCCTGCTGCAGTCCCAGACTCTCCCTTCATTCTCACTCATCCCCTTGTTCCCCTACGCGTGTGAATGACTAACTTCCTGCAGGGTGAGAGAGGTAGCCCAGGGTGGCCCTCACAGCTGGGAGATGGGCATAGGGCAGCTCCTACACTGCTTGATGAAGACGAGTTGGGGCCCAGAAGGGGAAGGACAGGGACTTTTCAGGTCAGAAAGCAGTGGGAGTGCAGTGGTGTGAGGAGTGAGGCTTTGCAGCCTGCTGTGATAGCCTTGGTACCCACTGCCGCCCTCTTCCAG
Seq C2 exon
GGGCCTCCACGACACTCCCCTACCAGGTGTTCTTCATGCGGAAACTGTGGCTCAATGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035:ENSRNOT00000021405:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(13.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCTGAAGGAAGGAGACT
R:
TGGTGGTAATGGAGTATGGTGTCT
Band lengths:
190-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]