GgaINT0104547 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198109232-198109636:-
Coord C1 exon
chr1:198109549-198109636
Coord A exon
chr1:198109339-198109548
Coord C2 exon
chr1:198109232-198109338
Length
210 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
TCCCTGCTTCCTTCATGCAGGTA
3' ss Score
11.38
Exon sequences
Seq C1 exon
GTCATAAGTGTGCCCGAGGGAGATTTCTTCTTTGACTTTGTGAGACACCTGACGGACTGGATAAAGAAAGCAAGACCAGCAAAAGATG
Seq A exon
GTAACAGTGCCTTTTCTTCATTGTGGGTCACACACAGTCCTACTTGAGCCCTCTAGTCCTTTCAAAGGAGGCTGACTGCCATTCACCATATCCATTGGGCCATTGCTGTGGCTGTGCTGACCCTGGGGGCATCACCTGGGAGATGAGAAGATGGTCTGTCTGGTGCTCACAGCATTGTTATGATATCTGCTCCCTGCTTCCTTCATGCAG
Seq C2 exon
GTATAGTGCCTTCCCTCACCTACCAAGTGTTCTTCATGAAAAAGCTGTGGACCAACACAACACCTGGAAAGGATTCAATGGCAGATTCAATCTTCCACTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(31.2=100)
A:
NA
C2:
PF093795=FERM_N=PD(17.2=44.4),PF0037313=FERM_M=PU(12.4=38.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGTGTGCCCGAGGGAGATT
R:
TGATAATAGTGGAAGATTGAATCTGC
Band lengths:
190-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]