BtaINT0098297 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57409370-57409744:+
Coord C1 exon
chr15:57409370-57409457
Coord A exon
chr15:57409458-57409637
Coord C2 exon
chr15:57409638-57409744
Length
180 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACG
5' ss Score
6.05
3' ss Seq
CCGCCTGCCCTCTGCCCCAGGAG
3' ss Score
8.96
Exon sequences
Seq C1 exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTCGACTTTGTACGACATCTGACGGACTGGATAAAGAAAGCCCGGCCTGTCAGGGATG
Seq A exon
GTAACGTGAGGCTGAGTCCTGGGATCGTCTGAGGTCTGGGGCTGGCAGGTGCTGGCTGAGTGCCATACCTGAGGCCCAAGTGGGTGGGGCCCCAGGCTGGGGCTTCCTCCGGGGCTGGTGCTGGGCTGGACAGCCCTCTGTGCTGGCATCTTCTGGGTGACCGCCTGCCCTCTGCCCCAG
Seq C2 exon
GAGTCGTGCCCTCGCTGACCTACCAAGTGTTCTTCATGAAGAAGCTGTGGACCACCACAGTGCCAGGGAAGGACCCCATGGCCGATTCCATCTTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTCCCTGAGAATGACT
R:
AATAGTGGAAGATGGAATCGGCC
Band lengths:
186-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development