MmuINT0104577 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98054608-98054961:-
Coord C1 exon
chr7:98054874-98054961
Coord A exon
chr7:98054715-98054873
Coord C2 exon
chr7:98054608-98054714
Length
159 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CTGGCTGCCCTGTGCCACAGGAA
3' ss Score
8.41
Exon sequences
Seq C1 exon
GTCATCAGCGTCCCAGAGAATGATTTCTTCTTTGACTTTGTCCGACACCTGACAGACTGGATAAAGAAAGCACGGCCCATCAAGGACG
Seq A exon
GTAAGGGGCTGGGCTCTGGGATGCTAGCAGCACAGGGACTTGCTGGCTTGAGACTAGGCTGTGAAGCCCAGTAGTTAGCCAAGCAGCTGGAACCAAGCTGGCAGGGTCAAGGGACCTTCTTTGCTGAGACTCCGTGTGACTGGCTGCCCTGTGCCACAG
Seq C2 exon
GAATCGTGCCCTCACTAACCTACCAGGTGTTCTTCATGAAGAAGCTGTGGACCACCACAGTGCCGGGCAAGGACCCCATGGCTGACTCCATCTTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCATCAGCGTCCCAGAGAATG
R:
TGGTAATAGTGGAAGATGGAGTCA
Band lengths:
194-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types