RnoINT0097402 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163005719-163006079:-
Coord C1 exon
chr1:163005992-163006079
Coord A exon
chr1:163005826-163005991
Coord C2 exon
chr1:163005719-163005825
Length
166 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTAGCTGCTCTGTGCCACAGGAA
3' ss Score
7.48
Exon sequences
Seq C1 exon
GTCATCAGCGTCCCTGAGAATGACTTCTTCTTTGACTTTGTTCGACACCTGACAGACTGGATAAAGAAGGCACGGCCCATCAAGGATG
Seq A exon
GTAAGAGACGGGGCTCTGGGATGCTAGGGGAACGGGGACAGGAACATGTTGGTTCAAGGCCAGACTGTGAAGCCTAATAGTTAGCCAAGGGGGCGGGAACCGAGCTGGCAGGGTCAGGGGACGTTCTTTGCTGAGACTCCGTGTGACTAGCTGCTCTGTGCCACAG
Seq C2 exon
GAATCGTGCCCTCACTGACCTACCAGGTGTTCTTCATGAAGAAGCTGTGGACCACCACCGTGCCTGGCAAGGACCCCATGGCCGACTCCATATTCCACTATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(10.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGTCCCTGAGAATGACT
R:
AATAGTGGAATATGGAGTCGGCC
Band lengths:
186-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]