DreINT0101053 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3177394-3178227:+
Coord C1 exon
chr18:3177394-3177481
Coord A exon
chr18:3177482-3178120
Coord C2 exon
chr18:3178121-3178227
Length
639 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
TCTCTTACTGTGGTGTTCAGGTA
3' ss Score
7.78
Exon sequences
Seq C1 exon
GTGATCAGTGTGCCTGAGGGGGATTTCTTCTTCGACTTTGTCCGCCATTTGACCGATTGGATAAAGAAAGCAAGACCTGCTAAAGATG
Seq A exon
GTATGTCTGATTTCTGCTTTACATTGATGGTATACTGCATTTATGTCTCGTGTGCACTTTCAAAATATTAATATGACATTACTTGGGACATTCAGCGTCATGATATACTACCATTCAACCAAATGTGAGTTGTTAAGATTTTTGAAAGGTTTCTCTAATGCTTTTCAAGGCTGCATTTATTAGAAATATAGTATAAATTTGAAATATTATTCCCATTCAAAATGAATGTTTTCTATGTGAATAAATACTAAAATGTAATTTATTTCTGTGTTGCGAAGCTGAATTTTTCACATGATCTTTCAGAATTTATTGTAATACGCTGATTTAATGATCAAGAAAGATTTATTTTTATCATCAATGCTGAAAACAGTTGTGCCGCTTCATATTGTAAAGCTAATTAAAACCATTAAAAAAGCGACGTGGTAAAATTTGGGCTTATTTTCTGAGAAATAAAGTTTTTAAAACAGTCACAATTGTGAGATATAATAAATTATAGAGTCAGAATAATAAATTATAGTGTGTCGCCCTGAACTTTTGATCAATTGAATCTATAAATTTAATGCCAACGTTTGATTCTTTTGATTTGGGAATTATAAAAACCTGCAGAGTTGGAGTAACATCTCTTACTGTGGTGTTCAG
Seq C2 exon
GTATAGTGCCTTCACTGACCTACCAGGTGTTCTTCATGAAGAAGCTATGGACAACCACCGTTCCAGGCAAAGACTCCTTTGCAGACTCCATCTTCCACTATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(31.2=100)
A:
NA
C2:
PF093795=FERM_N=PD(17.2=44.4),PF0037313=FERM_M=PU(10.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTGCCTGAGGGGGAT
R:
TGATAATAGTGGAAGATGGAGTCTGC
Band lengths:
190-829
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]