DreINT0015017 @ danRer10
Intron Retention
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28116549-28116830:+
Coord C1 exon
chr6:28116549-28116636
Coord A exon
chr6:28116637-28116720
Coord C2 exon
chr6:28116721-28116830
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCTGATACTGTTTTAAACAGCAG
3' ss Score
4.18
Exon sequences
Seq C1 exon
GTTCTGAGTTTGAATGAAACAGACTACTTCTTTGACAGCCTCAGACAGATTACTGATTGGTCCAAAAGAGCAAAGAGAGTGAATCAAG
Seq A exon
GTAAGTCTGTTTGTTTTCTTTTAAATGGAACAGGTTTGAACTTAAATTCAAAGCAGTTGACATTGCTGATACTGTTTTAAACAG
Seq C2 exon
CAGGGGCTCCAGTGAATGTGTCCTACACTGTTTTCTTTATGAGGAAGCTATGGTTCAACATTATCCCTGGGAGAGATGTGGAGGCAGATCTCATCTTCCATTACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441:ENSDART00000143218:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.5=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.9=48.6),PF0037313=FERM_M=PU(12.4=37.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTACTTCTTTGACAGCCT
R:
GAAGATGAGATCTGCCTCCACA
Band lengths:
168-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]