HsaINT0108984 @ hg19
Intron Retention
Gene
ENSG00000169994 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:7607]
Coordinates
chr2:128392171-128392801:+
Coord C1 exon
chr2:128392171-128392258
Coord A exon
chr2:128392259-128392694
Coord C2 exon
chr2:128392695-128392801
Length
436 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTGCTGGCCCTCGCCCAGGGG
3' ss Score
3.9
Exon sequences
Seq C1 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGATTCCTTGAGGGAGGTGTCTGACTGGGTGAAGAAGAACAAGCCCCAGAAAGAAG
Seq A exon
GTGAGGAGGCCTCTGTGGAGCTGGGGGAGGGCGTGGCTGGGTGGGTCGAGGGGGCACTGGCGGCCTCTGTGCGGCCCATGCCCATTCATCCATCCATTCGTTCCCGTGTGTCCCTGGGTTGTGGGAACAACCAGGCCCTGGGGCCCGGCGGTGAGGGCCAGCTCAGGCAGAAACAGGTGGCTGCACCTTGGAGTGATGAAGGATGCCCCAGGGCTGAGGGGCATGACCCTCATGGGCTGGGAGTGCGAGTCCAGGAATGTTCCTGGAGAAGGCAGCCTCTACACTAATATTGAAGGAAAATGTGGGGACTGGGGAGGAAGAAGCGTGGGGGCTTTCGAGGCAGGGAGGTGGCAGGCGCAGTGTGGGGGGTGGCAGGGGGTCAGGGCTGGTGTACCTGCTGGGACAGGCTTGGTGCCCACTGCTGGCCCTCGCCCAG
Seq C2 exon
GGGCCCCCGTGACGCTCCCCTACCAGGTGTACTTCATGCGGAAATTGTGGCTCAACATATCTCCAGGGAAGGATGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169994-MYO7B:NM_001080527:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(13.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGCCAGAAGGAGGGAG
R:
TGGTAATGGAGTATGGTGTCTGC
Band lengths:
190-626
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)