BtaINT0098346 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4822043-4822773:-
Coord C1 exon
chr2:4822686-4822773
Coord A exon
chr2:4822150-4822685
Coord C2 exon
chr2:4822043-4822149
Length
536 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCACTGCTGCCCCTGCCCAGGGG
3' ss Score
7.28
Exon sequences
Seq C1 exon
GTCATCAGCCAGAAGGAGGGAGACTTCTTCTTTGACTCCTTGCGGCAAGTGTCCGACTGGGTAAAGAAGAACAAGCCCCAGAAGGAAG
Seq A exon
GTGAGCAGAAGGCTCTGAGAGCCAGGCTGGGGCCACAAAGGAGGGTGTTGCTGGGATATGAGGTGAAGCAGAGCTTGTCTGCCTCCTGGACCAGGGTCAGACAGCTCCCCGGGACCCTCCCGCATGGCCCATGCCCATTTATTCATTCATTCTCCTCAGGTCCCCTGGCTCATGGGTGTGGCCAGGCCTGGGGCCAGGCAGTGAGGCCCTGCCCTGAGAACTCTACCAGCTCGGGCAGGGGCTGGGCTTGGGGCAGGCCTGGAACACATGGCCGGACTTTGGGGTGATGAAGGGTGCACAGGGGCAGAAGGGAGTCTGACCCCGCAGGGAGATCCAGGAGCGCCCACTCATCCTGAAGGCTGAGGAAGGGCTGGGGGCCAGGGAGAGAGGTATGGGGGCTTTCCAAAGGGGAGGTCATGGCAGCAGACACAGCAGCGACATGGGAGGGCCAAGTGGCGGGGTGCAGGAGTGGGGATAAAGCCTCAGAGCCTGGCTGGCCAGGGACAGGCTCTGTGCTCACTGCTGCCCCTGCCCAG
Seq C2 exon
GGGCCCCTGTGACAATCCCCTATCAGGTATATTTCATGCGGAAACTGTGGCTCAACGTGGCCCCTGGGAAAGATGTGAAGGCAGACACCATCCTTCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803:ENSBTAT00000061382:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0037313=FERM_M=PU(13.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGCCAGAAGGAGGGAG
R:
TGGTAATGAAGGATGGTGTCTGC
Band lengths:
190-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]