MmuINT0104623 @ mm9
Intron Retention
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32121462-32122019:-
Coord C1 exon
chr18:32121932-32122019
Coord A exon
chr18:32121569-32121931
Coord C2 exon
chr18:32121462-32121568
Length
363 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CACTGCCGTCCCTCTTCTAGGGG
3' ss Score
11
Exon sequences
Seq C1 exon
GTCATCAGTCTGAAGGAAGGAGACTTCTTTTTTGACAGCTTGAGGCAGGTATCTGACTGGGTGAAGAAGAACAGGCCCCAGAAAGAAG
Seq A exon
GTGAGGAGGGCATCTCTCTGGAGGGGGTGGCTGCCTGCTGCATCACTGAAATGTTCCAGACCCTCCTTCCATTCTTGATCATCCCCAAGCTCCCCTAGACATGCAAATGACTAACTTCCTGCAGGGTGAGAGAGGTATCCAAGGGTGCTCCTCACGCCTGGGAGATGGGTCTAGGGACATTTCTGGAGACAGTTCCTACGCAGCTTGATGAAAATGAGTTGAGGGCCCAGGAGAGGGGAGGACAGGGACTTTCCAGACCAGAAAGCAGTGGGAGTCGTGGGAGAGCTAGGAACGTTTTCTTCAGGAGTGAGCCTTTGGAGCCTGCTAGGATAGGCTTGGTGCCCACTGCCGTCCCTCTTCTAG
Seq C2 exon
GGGCCTCCGTGACACTTCCCTATCAGGTGTTCTTCATGCGGAAACTGTGGCTCAACGTGACCCCTGGGAAGGACGTGAATGCAGACACCATACTCCATTACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-Myo7b:NM_032394:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093795=FERM_N=FE(30.9=100)
A:
NA
C2:
PF093795=FERM_N=PD(18.1=47.2),PF0037313=FERM_M=PU(13.9=44.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCAGTCTGAAGGAAGGAGACT
R:
TGGTAATGGAGTATGGTGTCTGC
Band lengths:
190-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: