DreALTA0002712-4/4 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000095415 | RNF224
Description
ring finger protein 224 [Source:HGNC Symbol;Acc:HGNC:41912]
Coordinates
chr5:56789191-56809889:-
Coord C1 exon
chr5:56809832-56809889
Coord A exon
chr5:56789334-56789495
Coord C2 exon
chr5:56789191-56789333
Length
162 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
TTGTTTGCCCTCCATTTCAGAAC
3' ss Score
10.9
Exon sequences
Seq C1 exon
GTGAGACAGAACTGAGCCATCAGGTTGGAGGAAAAAGAGGAGGAGGCTCCAGCTGACC
Seq A exon
AACAGCAGTCGTGGTTGGTTGGTTGGTCGCTCGGTTGTTTTGAGACAGAGAGAGAGAGAGCACAAACGGCAACAAAGACAGAGTCAGTGGCTGCTGGGAACCACGAAGAGAAGTTCAGGGAAAGCAACAGAGGGTGCACTCGACTGTTAAACTGCCTTACAG
Seq C2 exon
AGCACGTGAAGCATGGAGAAACCAAGACAGAGTCGGCTGTAAAATGGTTACAGAAGTTGGACCTTTGGTACATTAAACATGGATGGGACTGTGAGTGGAACAACAGATCCTCAGGAGAACCGGAGTGTAAAAGACGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095415-2-7,2-6,2-5,2-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACAGAACTGAGCCATCA
R:
TCCTCGTCTTTTACACTCCGGT
Band lengths:
198-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]