DreEX0007566 @ danRer10
Exon Skipping
Gene
ENSDARG00000095415 | RNF224
Description
ring finger protein 224 [Source:HGNC Symbol;Acc:HGNC:41912]
Coordinates
chr5:56785977-56809889:-
Coord C1 exon
chr5:56809832-56809889
Coord A exon
chr5:56789191-56789495
Coord C2 exon
chr5:56785977-56786193
Length
305 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCCCTCCATTTCAGAAC
3' ss Score
10.9
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGAGACAGAACTGAGCCATCAGGTTGGAGGAAAAAGAGGAGGAGGCTCCAGCTGACC
Seq A exon
AACAGCAGTCGTGGTTGGTTGGTTGGTCGCTCGGTTGTTTTGAGACAGAGAGAGAGAGAGCACAAACGGCAACAAAGACAGAGTCAGTGGCTGCTGGGAACCACGAAGAGAAGTTCAGGGAAAGCAACAGAGGGTGCACTCGACTGTTAAACTGCCTTACAGAGCACGTGAAGCATGGAGAAACCAAGACAGAGTCGGCTGTAAAATGGTTACAGAAGTTGGACCTTTGGTACATTAAACATGGATGGGACTGTGAGTGGAACAACAGATCCTCAGGAGAACCGGAGTGTAAAAGACGAGGACAG
Seq C2 exon
GATTTCGGTTAAGGATGGACCTGTGTCTGCGACTCCGGTTGAAGGGGATGTGGATGCAGACGCCGGGGCGCAGAACTCCCGGGACAGCCGTAAACTGGACTGCATCGTCTGCTACAGTGCATATAATCTGGGAGAACGACTACCACGGAAGCTCTACTGCGGACACACGTTCTGCCAGGCCTGTCTGAAGCGCCTTGACACACTCATCAATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095415_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.342
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0136316=FYVE=PU(79.0=67.1),PF136391=zf-RING_2=PU(80.0=54.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACAGAACTGAGCCATCA
R:
CATTGATGAGTGTGTCAAGGCG
Band lengths:
270-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]