DreALTA0002777-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000099080 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr10:44437143-44438109:-
Coord C1 exon
chr10:44438008-44438109
Coord A exon
chr10:44437462-44437464
Coord C2 exon
chr10:44437143-44437461
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TGCGTAACCTGTGTGTGCAGGAG
3' ss Score
6.08
Exon sequences
Seq C1 exon
CCGGTCTCATTAAATGCACTCGACATCGGTCTCAGTAATGAAGCTTCAGGAGTCGTCAGGATTGATCCTCCAGTTCCTCCAACACCTACAGTCACAATCAGG
Seq A exon
GAG
Seq C2 exon
AAGCCTCAGCCCTCCACCACCACCTTTGTGCTGAATCAGCTGAATCAGTTGCCTTCGCTGGGAACCATCGTGGTCTCCAAACCCTCGACGGGCAGCAGCACCAGACAGACCATCACCGTCACCAAGGTGCTGCACAGCTCCTCTCCAGCACAGCGCAGCTCCGCTTCTCCCAGCGTCTGCACTGCGGCTCCGGCAAACACTGAGCAGATCCGGCTGAAGGACCTGCTGAGGAGCAGCAGCCTGAAGAGCAGCAGTCTGGGGGAGCTAATGAAGCTGAAGCCCCCGGCAGACATCGCACCACCTGTCGCCACCGCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099080-7-5,7-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTTCAGGAGTCGTCAGGA
R:
CACAAAGGTGGTGGTGGAGG
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]