MmuALTA0015863-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000038095 | Sbno1
Description
sno, strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124860079-124863298:-
Coord C1 exon
chr5:124863194-124863298
Coord A exon
chr5:124860389-124860391
Coord C2 exon
chr5:124860079-124860388
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
AATGTTGTTTTCTTTTTTAGCAG
3' ss Score
9.32
Exon sequences
Seq C1 exon
TCGGTGCCACTTAGTGCATTAGAACTAGGGTTGGAGACAGAAGCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATGTCCACTCCCGCACTGTTAAATGTGAGG
Seq A exon
CAG
Seq C2 exon
CAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAAACACCACCTGCAACAACGAATAGGCAAACCATCACTTTGACAAAGTTCATCCAGACCACTGCAAACACACGCCCTTCAGTTTCAGCACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACTCAAAAATAATAGTTTAAACGAACTCATGAAACTGAAGCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095-6-8,6-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=NA C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACAGAAGCAGCAGTTCC
R:
ACGTTGTAGTGGATGGAGGCT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: