MmuEX0041081 @ mm9
Exon Skipping
Gene
ENSMUSG00000038095 | Sbno1
Description
sno, strawberry notch homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:2384298]
Coordinates
chr5:124860079-124864536:-
Coord C1 exon
chr5:124864408-124864536
Coord A exon
chr5:124863194-124863298
Coord C2 exon
chr5:124860079-124860391
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTACTTTCTCTGCAGTCG
3' ss Score
8.9
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGGTGGAACCAGGGCAAGATTTACTGCTTGCTGCCTTGAGTGAGAGTGGGATTAGTCCGAATGACCTCTTTGATGTTGATGGTGGAGATGCTGGCCTTGCCACCCCTACGCCCCCTTCAGTTCAACAG
Seq A exon
TCGGTGCCACTTAGTGCATTAGAACTAGGGTTGGAGACAGAAGCAGCAGTTCCTGTCAAACAAGAGCCAGAGCCGATGTCCACTCCCGCACTGTTAAATGTGAGG
Seq C2 exon
CAGCAGCCTCCATCCACTACAACGTTTGTGCTGAATCAAATAAATCAACTTCCAACTTTGGGATCTACAATTGTAATGACTAAAACACCACCTGCAACAACGAATAGGCAAACCATCACTTTGACAAAGTTCATCCAGACCACTGCAAACACACGCCCTTCAGTTTCAGCACCAGCAGTACGAAATGCCATGCCCGCTGCTCCTTCAAAAGACCAGGTTCAGCTAAAGGATTTACTCAAAAATAATAGTTTAAACGAACTCATGAAACTGAAGCCACCCGCCAATATTGCTCAGCCAGTTGCAACTGCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038095_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.674 A=0.829 C2=0.894
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTGAGTGAGAGTGGGAT
R:
GTGTGTTTGCAGTGGTCTGGA
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: