GgaEX6013623 @ galGal4
Exon Skipping
Gene
ENSGALG00000003392 | SBNO1
Description
protein strawberry notch homolog 1 [Source:RefSeq peptide;Acc:NP_001026640]
Coordinates
chr15:5002524-5004441:+
Coord C1 exon
chr15:5002524-5002651
Coord A exon
chr15:5003305-5003409
Coord C2 exon
chr15:5004132-5004441
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCATTCCTCTGCAGTCA
3' ss Score
8.96
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AGATGGTGGAGCCAGGACAAGATCTGTTGCTTGCTGCTTTGAGTGAGAGTGGAATCAGTCCAAATGATCTATTTGATATTGACTCTCCGGACGTGGTTCTTGCAACTCCGACTCCAGCTGTTCAGCAG
Seq A exon
TCAGTGCCACTTAGTGCATTAGATCTAGGGTTGGAAACTGAGGCCCCAGCTGCTGTGAAACAAGAACCAGAGACTGTATCAACTCCAGCCTTATTAAATGTTCGG
Seq C2 exon
CAACCACCGTCCACCACAACCTTTGTGCTGAATCAAATAAATCAGCTTCCAACGTTGGGGACTACAATAGTGATGACAAAAACAACACCAGTTACAACTACGAGGCAGACTATTACTGTAGCAAAAATCATTCAGACCAGCACAACTACTCGACCCTCGGTTGCAGCACCAGCAGTACGGAATGCCTTGACCACTGCACCTTCAAAGGACCAGATCCAGCTGAAAGATCTGCTGAAGAATAATAGTCTTAATGAACTAATGAAATTGAAGCCACCTCCTAATATTGCGCAACCAGTAGCAACAGCAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003392-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.743 C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCTTGCAACTCCGACT
R:
GTCCTTTGAAGGTGCAGTGGT
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]