DreEX6089789 @ danRer10
Exon Skipping
Gene
ENSDARG00000099080 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr10:44437137-44438845:-
Coord C1 exon
chr10:44438729-44438845
Coord A exon
chr10:44438008-44438109
Coord C2 exon
chr10:44437137-44437464
Length
102 bp
Sequences
Splice sites
3' ss Seq
GATGGACTGTTTTCTTCCAGCCG
3' ss Score
7.05
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACGATGGATCCTGGTCAAGATTTGCTTCTGGCTGCTCTCAGTGAGAGTGGGATCTGCCCCAATGACCTGTTTGATGTGGATGTTCAGGACAGTGTTCCTCTGGTGTCCTCACAGCAG
Seq A exon
CCGGTCTCATTAAATGCACTCGACATCGGTCTCAGTAATGAAGCTTCAGGAGTCGTCAGGATTGATCCTCCAGTTCCTCCAACACCTACAGTCACAATCAGG
Seq C2 exon
GAGAAGCCTCAGCCCTCCACCACCACCTTTGTGCTGAATCAGCTGAATCAGTTGCCTTCGCTGGGAACCATCGTGGTCTCCAAACCCTCGACGGGCAGCAGCACCAGACAGACCATCACCGTCACCAAGGTGCTGCACAGCTCCTCTCCAGCACAGCGCAGCTCCGCTTCTCCCAGCGTCTGCACTGCGGCTCCGGCAAACACTGAGCAGATCCGGCTGAAGGACCTGCTGAGGAGCAGCAGCCTGAAGAGCAGCAGTCTGGGGGAGCTAATGAAGCTGAAGCCCCCGGCAGACATCGCACCACCTGTCGCCACCGCCACTGGCACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099080-'6-4,'6-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=0.559 C2=0.776
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTTCCTCTGGTGTCCT
R:
GATCTGCTCAGTGTTTGCCGG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]