GgaEX6013623 @ galGal3
Exon Skipping
Gene
ENSGALG00000003392 | SBNO1_CHICK
Description
NA
Coordinates
chr15:5052953-5054870:+
Coord C1 exon
chr15:5052953-5053080
Coord A exon
chr15:5053734-5053838
Coord C2 exon
chr15:5054561-5054870
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCATTCCTCTGCAGTCA
3' ss Score
8.96
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
AGATGGTGGAGCCAGGACAAGATCTGTTGCTTGCTGCTTTGAGTGAGAGTGGAATCAGTCCAAATGATCTATTTGATATTGACTCTCCGGACGTGGTTCTTGCAACTCCGACTCCAGCTGTTCAGCAG
Seq A exon
TCAGTGCCACTTAGTGCATTAGATCTAGGGTTGGAAACTGAGGCCCCAGCTGCTGTGAAACAAGAACCAGAGACTGTATCAACTCCAGCCTTATTAAATGTTCGG
Seq C2 exon
CAACCACCGTCCACCACAACCTTTGTGCTGAATCAAATAAATCAGCTTCCAACGTTGGGGACTACAATAGTGATGACAAAAACAACACCAGTTACAACTACGAGGCAGACTATTACTGTAGCAAAAATCATTCAGACCAGCACAACTACTCGACCCTCGGTTGCAGCACCAGCAGTACGGAATGCCTTGACCACTGCACCTTCAAAGGACCAGATCCAGCTGAAAGATCTGCTGAAGAATAATAGTCTTAATGAACTAATGAAATTGAAGCCACCTCCTAATATTGCGCAACCAGTAGCAACAGCAGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003392-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.743 C2=0.529
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTTCTTGCAACTCCGACT
R:
GTCCTTTGAAGGTGCAGTGGT
Band lengths:
246-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]