RnoEX0078198 @ rn6
Exon Skipping
Gene
ENSRNOG00000001064 | Sbno1
Description
strawberry notch homolog 1 [Source:RGD Symbol;Acc:1310005]
Coordinates
chr12:37603986-37608208:+
Coord C1 exon
chr12:37603986-37604114
Coord A exon
chr12:37605184-37605288
Coord C2 exon
chr12:37607896-37608208
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTACTTTCTCTACAGTCG
3' ss Score
8.62
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGGTGGAACCAGGGCAAGATTTACTACTTGCGGCCTTGAGCGAGAGTGGGATTAGTCCGAATGACCTCTTTGATGTTGATGGTGGAGATGCTGGACTTGCCACCCCTACTCCCCCTTCAGTTCAACAG
Seq A exon
TCGGTGCCACTTAGTGCATTAGAACTAGGTTTGGAGACAGAAGCAGCAATTCCTGTTAAACAAGAACCCGAGATGATGTCTACTCCGGCACTGTTAAATGTGAGG
Seq C2 exon
CAGCAGCCTCCATCCACTACAACATTTGTGCTGAATCAAATCAATCAACTTCCAACCTTGGGATCTACAATTGTAATGACTAAAACACCACCTGCAACAACGAATAGGCAAACCATCACTTTGACTAAGTTCATCCAGACCACTGCAAACACACGCCCTTCAGTTTCAGCACCAGCAGTACGGAATGCCATCCCCCCTGCTCCCGCAAAAGACCAAGTTCAGCTAAAGGATTTACTCAAAAATAATAGTTTAAATGAACTCATGAAACTGAAGCCACCTGCCAATATTGCTCAGCCAGTTGCAACTGCGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001064_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.637 A=0.829 C2=0.872
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGAGTGGGATTAGTCCGA
R:
GTGTGTTTGCAGTGGTCTGGA
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]