BtaEX0031435 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020505 | SBNO1
Description
strawberry notch homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:22973]
Coordinates
chr17:54495775-54498795:+
Coord C1 exon
chr17:54495775-54495906
Coord A exon
chr17:54496490-54496594
Coord C2 exon
chr17:54498486-54498795
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTGATGTTTTCTCTCCAGTCA
3' ss Score
8.67
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGGTGGAACCAGGGCAAGATTTACTGCTTGCTGCTTTGAGCGAGAGTGGAATTAGTCCAAATGACCTCTTTGATATTGATGGTGGAGATGCGGGGCTTGCAACTCCAACACCTACCCCTCCCATACAGCAG
Seq A exon
TCAGTGCCACTTAGTGCATTAGAACTAGGTTTGGAGACTGAAGCAGCAGTTCCTGTTAAACAAGAACCAGAGACGGTACCTACTCCAGCACTTTTAAATGTTAGG
Seq C2 exon
CAGCCTCCATCTACTACAACATTTGTGCTGAATCAAATAAATCAGCTTCCAACCTTGGGATCTACAATTGTAATGACTAAGACACCACCTGTAACCACGAATAGGCAAACCATCACTTTAACGAAGTTCATTCAGACTACTGCAAACACACGCCCTTCAGTCTCAGCACCAGCAGTACGAAATGCCATGACTTCCGCACCTTCAAAAGACCAAGTTCAACTGAAGGACCTGCTAAAAAATAATAGTCTGAATGAACTCATGAAACTGAAGCCACCTGCTAATATTGCTCAGCCAGTTGCAACAGCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020505_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=0.829 C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGCAACTCCAACACCTA
R:
TTGAAGGTGCGGAAGTCATGG
Band lengths:
243-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development